13 Commands to Assist in Conformational Search

There are several commands available in the CONGEN program to assist in a conformational search. The SPLICE command can be used to change the sequence of a structure to greatly simplify the modeling of mutations. The XCONF command is used to read a single conformation from a conformation file. The MERGE CG command is used to manipulate conformation files; either to merge them, and also to divide and recombine them.

• Splice Command: Change the sequence of the PSF.
• Xconf Command: Extract a conformation from a conformation file
• Merge CG Command: Merge or divide a conformation file